I do feel that they messed with the ride a little too much during the upgrade. I prefer the pacing of the older version, and of course nothing beats the old soundtrack that tied everything together perfectly.
I feel as if there are a few spots that are awkward. Such as Scene 9.1, just after the levitation. There's this gap between the scenes that's really noticeable. The old version just dove right into the "I'm webbing you down!" part. The fall is also way too fast.
All I was hoping for was new animation and a darker tone, but with the exact same timings. The pacing on the old version just worked better IMO.
I do love how they implemented the new RV control software used on TF. It enables the actuators to move faster and smoother, something that was extremely challenging to balance with the old software. A fine example is when the RV briefly gets caught in Hobgoblins jet wash in Scene 2 (warehouse).
That being said, I am still thankful for the much needed upgrade this ride got. It's still my favorite ride anywhere.